What Dogs Smell That We Don’t:The Microbiome Story

Hi Friends,

Just this morning, I was walking through my neighborhood when I watched three dogs meet.

Before any tail wagging or play began, one of the larger dogs immediately went in for a sniff — straight to the butt.

It made me smile… and then my doctor brain kicked in.

Why do dogs do this?

Dogs don’t rely on words or facial expressions the way humans do. They rely on scent — and scent is biology.

That quick sniff gives a dog an incredible amount of information. Chemical signals released from the anal glands and surrounding skin reflect hormones, metabolism, immune health, and the microbiome.

In just a few seconds, a dog can sense whether they’ve met before, whether the other dog is male or female, calm or stressed, and whether something feels off. This isn’t rude behavior in dog language. It’s social intelligence.

The microbiome plays a central role here. The bacteria living on and around the body metabolize secretions and create unique odor signatures. When the microbiome changes — because of diet, stress, antibiotics, inflammation, or illness — the scent changes too.

Humans send these signals too — we’re just far less aware of them.

In my practice, I often see patients whose primary complaint is a change in their breath. They’ll say, “I can’t explain it — something just feels off.” And more often than not, they’re right.

Changes in breath, body odor, or vaginal odor are frequently early signs of microbiome imbalance, sometimes long before testing shows any abnormalities. These are subtle biological signals the body sends early — signals we tend to mask rather than listen to.

Which brings us to something remarkable.

Dogs can smell disease in humans.

This isn’t folklore. Research has shown that trained dogs can detect certain cancers simply by smelling breath, urine, or skin. Dogs aren’t smelling “cancer” itself. They’re detecting changes in metabolic and microbial byproducts — volatile chemical signals released when cells behave differently under inflammation, immune dysfunction, or malignant transformation.

Even more fascinating, cancers themselves have microbiomes. Tumors are not sterile, and the bacteria living within them influence inflammation, immune signaling, and metabolism — all of which further alter the chemical signals released by the body.

Odor is one of the body’s most overlooked — yet powerful — indicators of health.

Dogs are remarkable animals, able to detect early shifts in microbial and metabolic signals through scent, made possible by a sense of smell up to 1,000 times more sensitive than ours.

Odor Changes During Treatment

It’s important to understand that not all changes in odor are a sign that something is going wrong. In some cases, they are a normal and expected part of treatment.

In my practice, we often treat SIBO with Allicidin, a garlic-derived compound that also helps address Candida, H. pylori, fungal overgrowth, and dysbiosis.

Many patients — and often their loved ones — notice changes in breath or body odor while taking it.

This is a normal response that reflects active antimicrobial effects and rapid changes in gut bacteria and their metabolic byproducts. Once the treatment course is completed, the odor goes away.

Of course, there are simple ways to make this more tolerable. Sipping water with a drop of peppermint oil, or using essential oils topically if needed, can be helpful during treatment.

Alcohol, the Microbiome, and Colon Cancer

New research published in the journal Cancer shows that people with higher lifetime alcohol consumption — defined as an average of 14 or more alcoholic drinks per week — had a significantly higher risk of colorectal cancer compared with those who consumed very little alcohol. Specifically, heavy lifetime drinking was linked with a roughly 25% greater risk of colorectal cancer and up to a 95% higher risk of rectal cancer, and consistent heavy drinking over adulthood was associated with nearly double the risk compared with light drinkers. Former drinkers showed lower risks of precancerous lesions, suggesting that quitting alcohol may reduce the risk.

Alcohol alters the gut microbiome in ways that drive dysbiosis and inflammation in the colon, helping explain the link between long-term drinking and colorectal cancer risk.

Digestive Enzyme Pro

Supports the breakdown of proteins, fats, and carbohydrates to reduce bloating.

Essential Magnesium

A chelated magnesium to keep your bowels regular, improve the quality of your sleep, and promote relaxation.

Motility Activator

A natural prokinetic made from ginger to activate the “cleaning waves” in your intestines and reduce bloating.

Spore Probiotic IgG

A gentle Bacillus-based spore probiotic that improves symptoms in SIBO and IBS. Immunoglobulins help bind toxins and reduce inflammation.

Berberine Pro

Herbal antimicrobial for treating SIBO, SIFO, Candida, and Dysbiosis. Also used for insulin-resistance and metabolic health.

Oregano Oil

Herbal antimicrobial for treating SIBO, SIFO, Candida, and Dysbiosis. Also good for preventing and treating upper respiratory and sinus infections.

Allicidin

Herbal antimicrobial for treating SIBO, SIFO, Candida, and Dysbiosis. Also great for sinus infections.

Betaine and Pepsin

“Stomach acid” pills to improve digestion of proteins and reduce bloating.

Blueberry Muffins

These blueberry muffins are loaded in flavor, but lower in carbs since it uses almond and coconut flour instead of traditional white flour. 

Dry Ingredients:
1 and 1/2 cup almond flour
1/2 cup coconut flour
2 tsp baking powder
1/4 tsp salt

Wet Ingredients:
4 eggs
1/2 cup olive oil
1/4 cup maple syrup
2 tsp vanilla extract
Zest of 1 lemon 
1/2 cup water

Final Ingredient:
Fresh organic blueberries (small 6 oz package)

Mix the wet and dry ingredients separately in 2 large mixing bowls.

 Add the dry ingredients to the wet ingredients and mix well.

Then gently stir in the blueberries.

Scoop the batter into a 12 cupcake pan, lined with cupcake wrappers.

Bake at 350 degrees F for 25 minutes.

Enjoy!

Our furry friends instinctively tune into the microbiome through their extraordinarily sensitive sense of smell. We, too, can learn to pay attention to changes in scent — in ourselves and in our loved ones — as meaningful clues to health.

I don’t mean to be too nosy (no pun intended), but if you’d like to share an experience where a change in odor reflected a shift in your health, I’d love to hear from you.

Stay curious,

Rajsree Nambudripad, MD